Therefore the identification of any new drug target enzyme such as FAAH or any drug processing mechanisms in Fosbretabulin Dictyostelium suggests further potential

for the use of Dictyostelium in human biomedical research. Dictyostelium offers an attractive system to study such processes by gene manipulation studies because of its small 34 Mbp haploid genome harbouring many homologous genes found in higher eukaryotes [18]. Results Amino acid sequence analysis A putative FAAH in Dictyostelium was identified by a bioinformatics approach searching for a human FAAH homolog in the Dictyostelium genome. Dictyostelium DNA sequence DDB_G0275967 (http://​dictybase.​org/​gene) [GenBank: XM_638290] containing coding sequences for characteristic amidase signature motifs [19] was identified and found to be located on chromosome 2 in the annotated Dictyostelium genome data base. [GenBank: selleckchem XM_638290] will be referred to as Dictyostelium FAAH as the protein’s amino acid sequence analysis and other experimental results

confirm its function to be similar to mammalian FAAH. The calculated molecular weight of Dictyostelium FAAH is 70 kDa and domain architecture analysis (http://​www.​ncbi.​nlm.​nih.​gov/​structure/​cdd) reveals the presence of an amidase domain composed of a characteristic amidase signature (AS) sequence (Figure 1). The consensus amidase signature sequence has a conserved GSS(G/A/S)G (residues 304 to 308) motif shared among many proteins in the amidase class including glutamyl-t-RNA amidotransferase subunit A https://www.selleckchem.com/products/ABT-263.html of Methanococcus

jannaschii and FAAH from human, porcine, rat, Arabidopsis and Dictyostelium. FAAH from human, porcine Dimethyl sulfoxide and rat are composed of 579 amino acids and FAAH from Dictyostelium and Arabidopsis contain 637 and 607 amino acids, respectively. FAAH full length protein amino acid sequence from Dictyostelium lacks significant identity when compared to FAAH from human (20%), porcine (20%), rat (20%), and Arabidopsis (32%) (Figure 1), but identity across the amidase signature sequence increased to 40%, 38%, 38%, and 50%, for the human, procine, rat, and Arabidopsis FAAH homologs. The serine residues at 217 and 241 found to be essential for rat FAAH activity [20] were also conserved in AS sequence of Dictyostelium FAAH. Other catalytically important residues Lys142, Ser218 and Arg243 found in rat were also conserved in Dictyostelium. Figure 1 Comparative alignment of amino acid sequences of Dictyostelium FAAH with mammalian and Arabidopsis FAAH. Full length amino acid sequence alignment of human [NCBI:NP_001432], porcine [NCBI:NP_999079], rat [NCBI:NP_077046], Arabidopsis (AT) [NCBI:AAP83139] and Dictyostelium (Dicty) [NCBI:XP_643382]. The amidase signature (AS) sequence is underlined and consists of about 126 amino acids.