McKenna P, Hoffmann C, Minkah N, Aye PP, Lackner A, Liu Z, Lozupo

McKenna P, Hoffmann C, Minkah N, Aye PP, Lackner A, Liu Z, Lozupone CA, Hamady M, Knight R, Bushman FD: The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis. PLoS pathogens 2008,4(2):e20.PubMedCrossRef 19. Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, Niazi F, Affourtit J, Egholm M, Henrissat B, Knight R, et al.: Organismal, genetic, and transcriptional Selleckchem Stattic variation in the deeply sequenced gut microbiomes of identical twins. Proc Natl Acad Sci USA 2010,107(16):7503–7508.PubMedCrossRef 20. Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman

MS, Chen YJ, Chen Z, et al.: Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005,437(7057):376–380.PubMed 21. Pace NR, Olsen GJ, Woese CR: Ribosomal RNA phylogeny and the primary lines of evolutionary descent. Cell 1986,45(3):325–326.PubMedCrossRef 22. Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar , Buchner A, Lai T, Steppi S, Jobb G, et al.: ARB: a software environment for sequence data. Nucleic acids research 2004,32(4):1363–1371.PubMedCrossRef 23. Wang Q, Garrity GM, Tiedje JM, Cole JR: Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.

Applied and Environmental Microbiology 2007,73(16):5261–5267.PubMedCrossRef 24. Polz MF, Cavanaugh CM: Bias in template-to-product ratios in multitemplate PCR. Applied and Environmental Microbiology 1998,64(10):3724–3730.PubMed Mannose-binding protein-associated serine protease 25. Liu Z, Lozupone C, Hamady M, Bushman FD, Knight R: Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic acids research 2007,35(18):e120.PubMedCrossRef 26. Lauber BLZ945 price CL, Zhou N, www.selleckchem.com/PARP.html Gordon JI, Knight R, Fierer N: Effect of storage conditions on the

assessment of bacterial community structure in soil and human-associated samples. FEMS Microbiol Lett 2010,307(1):80–6.PubMedCrossRef 27. Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE: Metagenomic analysis of the human distal gut microbiome. Science (New York, NY) 2006,312(5778):1355–1359.CrossRef 28. Hoffmann C, Minkah N, Leipzig J, Wang G, Arens MQ, Tebas P, Bushman FD: DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations. Nucleic acids research 2007,35(13):e91.PubMedCrossRef 29. Binladen J, Gilbert MT, Bollback JP, Panitz F, Bendixen C, Nielsen R, Willerslev E: The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS ONE 2007, 2:e197.PubMedCrossRef 30. Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R: Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nature methods 2008,5(3):235–237.PubMedCrossRef 31. Caporaso JG, Bittinger K, Bushman FD, Desantis TZ, Andersen GL, Knight R: PyNAST: A flexible tool for aligning sequences to a template alignment.

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